Package: aliases2entrez 0.1.2

Raphael Bonnet

aliases2entrez: Converts Human gene symbols to entrez IDs

Queries multiple resources authors HGNC (2019) <https://www.genenames.org>, authors limma (2015) <doi:10.1093/nar/gkv007> to find the correspondence between evolving nomenclature of human gene symbols, aliases, previous symbols or synonyms with stable, curated gene entrezID from NCBI database. This allows fast, accurate and up-to-date correspondence between human gene expression datasets from various date and platform (e.g: gene symbol: BRCA1 - ID: 672).

Authors:Raphael Bonnet [aut, cre], Lee Mariault [ctb], Jean-François Peyron [aut]

aliases2entrez_0.1.2.tar.gz
aliases2entrez_0.1.2.zip(r-4.5)aliases2entrez_0.1.2.zip(r-4.4)aliases2entrez_0.1.2.zip(r-4.3)
aliases2entrez_0.1.2.tgz(r-4.4-any)aliases2entrez_0.1.2.tgz(r-4.3-any)
aliases2entrez_0.1.2.tar.gz(r-4.5-noble)aliases2entrez_0.1.2.tar.gz(r-4.4-noble)
aliases2entrez_0.1.2.tgz(r-4.4-emscripten)aliases2entrez_0.1.2.tgz(r-4.3-emscripten)
aliases2entrez.pdf |aliases2entrez.html
aliases2entrez/json (API)
NEWS

# Install 'aliases2entrez' in R:
install.packages('aliases2entrez', repos = c('https://peyronlab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/peyronlab/aliases2entrez/issues

On CRAN:

2.00 score 1 stars 10 scripts 369 downloads 2 exports 61 dependencies

Last updated 4 years agofrom:6e38d7e789. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 12 2024
R-4.5-winOKOct 12 2024
R-4.5-linuxOKOct 12 2024
R-4.4-winOKOct 12 2024
R-4.4-macOKOct 12 2024
R-4.3-winOKOct 12 2024
R-4.3-macOKOct 12 2024

Exports:convert_symbolsupdate_symbols

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobcachemclicliprcodetoolscpp11crayoncurlDBIdoParallelfansifastmapforeachGenomeInfoDbGenomeInfoDbDatagluehmshttrIRangesiteratorsjsonliteKEGGRESTlifecyclelimmamagrittrmemoisemimeopensslorg.Hs.eg.dbpillarpkgconfigplogrpngprettyunitsprogressR6RCurlreadrrlangRSQLiteS4VectorsstatmodsystibbletidyselecttzdbUCSC.utilsutf8vctrsvroomwithrXVectorzlibbioc