Package: aliases2entrez 0.1.2
Raphael Bonnet
aliases2entrez: Converts Human gene symbols to entrez IDs
Queries multiple resources authors HGNC (2019) <https://www.genenames.org>, authors limma (2015) <doi:10.1093/nar/gkv007> to find the correspondence between evolving nomenclature of human gene symbols, aliases, previous symbols or synonyms with stable, curated gene entrezID from NCBI database. This allows fast, accurate and up-to-date correspondence between human gene expression datasets from various date and platform (e.g: gene symbol: BRCA1 - ID: 672).
Authors:
aliases2entrez_0.1.2.tar.gz
aliases2entrez_0.1.2.zip(r-4.5)aliases2entrez_0.1.2.zip(r-4.4)aliases2entrez_0.1.2.zip(r-4.3)
aliases2entrez_0.1.2.tgz(r-4.4-any)aliases2entrez_0.1.2.tgz(r-4.3-any)
aliases2entrez_0.1.2.tar.gz(r-4.5-noble)aliases2entrez_0.1.2.tar.gz(r-4.4-noble)
aliases2entrez_0.1.2.tgz(r-4.4-emscripten)aliases2entrez_0.1.2.tgz(r-4.3-emscripten)
aliases2entrez.pdf |aliases2entrez.html✨
aliases2entrez/json (API)
NEWS
# Install 'aliases2entrez' in R: |
install.packages('aliases2entrez', repos = c('https://peyronlab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/peyronlab/aliases2entrez/issues
Last updated 4 years agofrom:6e38d7e789. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 12 2024 |
R-4.5-win | OK | Oct 12 2024 |
R-4.5-linux | OK | Oct 12 2024 |
R-4.4-win | OK | Oct 12 2024 |
R-4.4-mac | OK | Oct 12 2024 |
R-4.3-win | OK | Oct 12 2024 |
R-4.3-mac | OK | Oct 12 2024 |
Exports:convert_symbolsupdate_symbols
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobcachemclicliprcodetoolscpp11crayoncurlDBIdoParallelfansifastmapforeachGenomeInfoDbGenomeInfoDbDatagluehmshttrIRangesiteratorsjsonliteKEGGRESTlifecyclelimmamagrittrmemoisemimeopensslorg.Hs.eg.dbpillarpkgconfigplogrpngprettyunitsprogressR6RCurlreadrrlangRSQLiteS4VectorsstatmodsystibbletidyselecttzdbUCSC.utilsutf8vctrsvroomwithrXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Multi resources gene symbols conversion to entrez ID (Human) | convert_symbols |
Update last HGNC correspondence database | update_symbols |